PdfMasher is a tool that allows you to convert PDF articles (newspaper, academic) to MOBI or EPUB documents. You can sort text elements by Y-position (thus grouping them all together), shift select the elements and flag them as ignored. You can also select PDF footnotes and flag them on the MOBI or EPUB document.
v0.6 [Aug 26, 2011]
-Fixed bugs preventing some PDFs to be read.
