Haploview 4.2

Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses. Haploview currently supports the following functionalities:

- LD & haplotype block analysis

- haplotype population frequency estimation

- single SNP and haplotype association tests

- permutation testing for association significance

- implementation of Paul de Bakker's Tagger tag SNP selection algorithm.

- automatic download of phased genotype data from HapMap

- visualization and plotting of PLINK whole genome association results including advanced filtering options