CLC Genomics Workbench is a program that allows you to analyze, compare and visualize NGS data. The program uses a SIMD-accelerated assembly algorithm that can analyze high-throughput sequencing data faster. Also, it supports major next generation sequencing platforms, such as SOLiD, Ion Torrent, Complete Genomics, 454, and Illumina Genome Analyzer.
v9.0 [Feb 27, 2016]
Fixed an issue with the RNA-Seq Analysis tool that could arise when the "Genomes annotated with genes and transcripts" option was chosen: If two or more genes had the same name, and a transcript could be assigned to each from the mRNA track, then the value in the "Transcripts annotated" column in the GE track and in the TE track was 0. Furthermore, all counts for such genes were reported as zero, even when there were reads mapping to them.
Fixed an issue that arose when executing workflows with multiple inputs in batch, where changes to pre-defined, fixed inputs specified during the launch process were not applied.
Fixed an exception in the Read Mapping Editor that could arise when working with mappings to circular references.
Fixed an issue where the Motif Search tool incorrectly reported all match accuracies as either 0% or 100%.
Fixed an issue where sorting a folder while saving into it could trigger an error.
Fixed a bug in the batch mode dialog that would lead to an error when problems related to the underlying file or data location were encountered.
Fixed broken help link in Ion Torrent importer.
