v5.3 [Dec 20, 2014]
- The Cufflinks suite for RNA-Seq data – Our user-friendly interface gives you the power of the command line without the hassle of the command line.
- Visualization tools for Differential Expression analysis.
- Enhancements to Sequencher Connections – Our visionary tool for running multiple analyses in parallel is now more flexible and customizable.
v5.2 [Nov 10, 2013]
- Sequencher Connections - Perform multiple customized BLAST searches or MUSCLE alignment on single or groups of sequences. View your results in webpage, text, or XML format all without leaving Sequencher.
- Use MUSCLE to create phylogenetic trees that can be viewed in multiple formats.
- BWA reference-guided alignment algorithm for NGS data sets.
- Added GSNAP flexibility - You now have the ability to capture reads that didn't align, or even to select only reads that didn't align.
